GLIC (4npq, 4hfi)

Description

  • description

Status

  • finished
  • Total cpu-time: 647:01:17 (hh:mm:ss)

Input end-state structures

  • Start file: start.pdb (chains: A,B,C,D,E)
  • Target file: target.pdb (chains: A,B,C,D,E)

Input ensemble structures

  • 46 models

Major Normal Modes

  • - (overlap -)
  • - (overlap -)

Major PC modes

  • - (variance -%)
  • - (variance -%)

Transitions

  • Forward: - % (- s)
  • Reverse: - % (- s)

RMSD

  • RMSD inital: 2.664 Å
  • RMSD final: - / - Å (forward/reverse)

Progress

RMSD

Files

Local

eBDIMS transitions can be reproduced on a local machine with the validated input data (i.e, start.pdb and target.pdb).
Compile the eBDIMS source code and run the executable file from the command line as
./eBDIMS_parallel [start.pdb] [target.pdb] [cutoff] [mode] [unbiasedSteps]
The parameters used were:
  • [cutoff] = 6
  • [mode] = 3
  • [unbiasedSteps] = 1